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sci-biology/hmmer

Sequence analysis using profile hidden Markov models

Screenshots

  • hmmer-2.3.2-r2
    ~alpha amd64 ~ia64 ~ppc ppc64 ~sparc x86
    pvm threads
    View      Download      License: GPL-2
  • hmmer-2.3.2-r1
    ~alpha amd64 ia64 ~ppc ~sparc x86
    pvm threads
    View      Download      License: GPL-2

ChangeLog

# ChangeLog for sci-biology/hmmer
# Copyright 2000-2008 Gentoo Foundation; Distributed under the GPL v2
# $Header: /var/cvsroot/gentoo-x86/sci-biology/hmmer/ChangeLog,v 1.23 2008/08/06 14:58:18 ulm Exp $

06 Aug 2008; Ulrich Mueller <ulm@gentoo.org> metadata.xml:
Add USE flag description to metadata wrt GLEP 56.

07 Feb 2008; Fabian Groffen <grobian@gentoo.org> hmmer-2.3.2-r1.ebuild,
hmmer-2.3.2-r2.ebuild:
Dropped ppc-macos keyword, see you in prefix

02 Jan 2008; Raúl Porcel <armin76@gentoo.org> hmmer-2.3.2-r2.ebuild:
Re-add ~ia64

13 Nov 2007; Raúl Porcel <armin76@gentoo.org> hmmer-2.3.2-r2.ebuild:
Add ~alpha

22 May 2007; Olivier Fisette <ribosome@gentoo.org> hmmer-2.3.2-r1.ebuild,
hmmer-2.3.2-r2.ebuild:
Updated home page. Stabilised bug-fix release on x86 and amd64.

22 Feb 2007; Markus Ullmann <jokey@gentoo.org> ChangeLog:
Redigest for Manifest2

14 Sep 2006; Olivier Fisette <ribosome@gentoo.org> metadata.xml:
Stepping down from maintaining this package.

07 May 2006; Markus Rothe <corsair@gentoo.org> hmmer-2.3.2-r2.ebuild:
Stable on ppc64

06 Apr 2006; Thomas Cort <tcort@gentoo.org> hmmer-2.3.2-r1.ebuild:
Added ~alpha keyword.

29 Mar 2006; Aron Griffis <agriffis@gentoo.org> hmmer-2.3.2-r1.ebuild:
Mark 2.3.2-r1 stable on ia64

23 Feb 2006; Aron Griffis <agriffis@gentoo.org> hmmer-2.3.2-r1.ebuild:
Mark 2.3.2-r1 ~ia64

24 Jan 2006; Markus Rothe <corsair@gentoo.org> hmmer-2.3.2-r2.ebuild:
Added ~ppc64; bug #119723

21 Jan 2006; Olivier Fisette <ribosome@gentoo.org>
-files/Makefile-hmmer-2.2g.patch, -hmmer-2.3.2.ebuild:
Removed obsolete version.

*hmmer-2.3.2-r2 (21 Jan 2006)

21 Jan 2006; Olivier Fisette <ribosome@gentoo.org> +hmmer-2.3.2-r2.ebuild:
Fixed compilation problem on ppc64 (see bug #119723).

04 Jan 2006; Olivier Fisette <ribosome@gentoo.org> hmmer-2.3.2-r1.ebuild:
Do not depend on "virtual/libc" (package not in system target).

19 Sep 2005; Olivier Fisette <ribosome@gentoo.org> metadata.xml:
Maintainer changed from Stephen Diener (MIA) to Olivier Fisette.

26 Aug 2005; Carlos Silva <r3pek@gentoo.org> hmmer-2.3.2-r1.ebuild:
Marked amd64

21 May 2005; Jason Wever <weeve@gentoo.org> hmmer-2.3.2-r1.ebuild:
Added ~sparc keyword.

13 May 2005; Olivier Fisette <ribosome@gentoo.org> hmmer-2.3.2-r1.ebuild:
Added to x86.

*hmmer-2.3.2-r1 (06 Mar 2005)

06 Mar 2005; Olivier Fisette <ribosome@gentoo.org> +hmmer-2.3.2-r1.ebuild:
Install header files, support for LFS, optional support for PVM and threads.

07 Feb 2005; <augustus@gentoo.org> hmmer-2.3.2.ebuild:
Marked amd64.

*hmmer-2.3.2 (23 Dec 2004)

23 Dec 2004; Olivier Fisette <ribosome@gentoo.org> +metadata.xml,
+files/Makefile-hmmer-2.2g.patch, +hmmer-2.3.2.ebuild:
Moved from app-sci/hmmer to sci-biology/hmmer.

31 Oct 2004; Olivier Fisette <ribosome@gentoo.org> -hmmer-2.3.1.ebuild,
hmmer-2.3.2.ebuild:
Added 2.3.2 to x86. Removed old version.

17 Oct 2004; David Holm <dholm@gentoo.org> hmmer-2.3.2.ebuild:
Added to ~ppc.

14 Oct 2004; Hasan Khalil <gongloo@gentoo.org> hmmer-2.3.2.ebuild:
Keyworded ~ppc-macos.

*hmmer-2.3.2 (29 Sep 2004)

29 Sep 2004; Olivier Fisette <ribosome@gentoo.org> -hmmer-2.2g.ebuild,
+hmmer-2.3.2.ebuild:
New version 2.3.2. Removed old version.

18 Nov 2003; Stephen Diener <sediener@gentoo.org> hmmer-2.3.1.ebuild:
~x86 -> x86

*hmmer-2.3.1 (28 Aug 2003)

28 Aug 2003; <sediener@gentoo.org> hmmer-2.3.1.ebuild:
Version bump

*hmmer-2.2g (07 May 2003)

07 May 2003; Jon Portnoy <avenj@gentoo.org> hmmer-2.2g.ebuild :
Initial import. Ebuild submitted by Steve Diener and Gontran Zepeda
in bug #20449.